Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12150.8800625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12170.85345United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12180.8795United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12190.8761375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12200.886128571United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12210.8871375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12220.8870875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12230.8627875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12240.8679United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12260.8782375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12270.8892625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12280.8847375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12290.8303875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12300.8892625United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12320.888975United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12330.8899375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12350.8807375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12360.8573125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12370.8624125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12380.8489United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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