Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08930.7105875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08940.744875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08970.74505United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08980.7072125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09010.7577625United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09020.7599United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09030.7336United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09070.7445United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09080.73854United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09110.7579375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09120.7287125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09130.7394United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09140.7665875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09190.762075United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09200.744775United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09210.7586375United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09220.7036375United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09230.7832125United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09240.78806United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09270.74785United StatesArizona34.75056-112.01697
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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