Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09290.72685United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09310.7477375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09320.7315375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09330.7527125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09340.7298125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09390.673175United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09400.7401625United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09430.7361875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09440.7438United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09470.7839United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09480.76145United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09490.772975United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09500.7707875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09510.705825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09520.7385875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09530.7134875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09540.702825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09550.73885United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09560.767575United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09570.76365United StatesNew Mexico35.40041-108.23557
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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