Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08700.7758375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08710.779375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08730.736United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08740.773175United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08760.7254375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08770.6967United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08780.70055United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08790.7702625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08800.76985United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08810.7654125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08820.7317875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08830.760075United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08840.7292625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08850.7709625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08860.7242375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08870.7800375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08880.7469625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08890.7590625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08910.7584625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08920.7336625United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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