Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08480.775025United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08510.776475United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08520.767675United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08530.738225United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08540.7653125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08550.76595United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08560.760875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08570.7263375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08580.78315United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08590.775625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08600.7599125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08610.73675United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08620.734557143United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08630.765625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08640.7691United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08650.75825United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08660.7444United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08670.72245United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08680.760225United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08690.789United StatesCalifornia38.7892-119.9363
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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