Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08250.7621875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08260.76055United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08270.76025United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08280.771575United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08310.715775United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08320.751675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08330.7687375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08340.757125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08350.773775United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08360.7536875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08370.7445125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08390.76415United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08400.687725United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08410.754575United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08420.7772United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08430.7584125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08440.7297125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08450.747625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08460.776025United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08470.763825United StatesCalifornia33.69278-116.18411
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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