Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13850.73565United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13860.7367875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13870.71525United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13880.7664United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13890.738875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13900.76215United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13910.7576United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13920.709225United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13930.7161375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13940.764475United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13950.7643125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13960.7733375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13970.7488625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13980.76715United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13990.7594United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14000.7107875United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14010.76325United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14020.7602375United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14030.7546United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14040.78675United StatesTexas27.77652-97.66801
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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