Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13650.7573625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13660.75745United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13670.76405United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13680.7483375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13690.7351United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13700.7715375United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13710.7701125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13720.74355United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13730.7638875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13740.7432875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13750.7910375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13760.7595125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13770.770725United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13780.7453625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13790.725525United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13800.7381875United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13810.779575United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13820.78065United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13830.7626125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13840.755775United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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