Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13410.7510375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13420.7622625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13430.751375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13440.7707625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13450.74005United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13460.7392625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13470.7705125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13480.7355United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13500.754825United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13510.7703875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13520.7644625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13530.7775625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13540.745275United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13550.765525United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13560.7442United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13590.77445United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13600.77995United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13610.7420125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13630.753475United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13640.697625United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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