Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12390.744371429United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12400.74915United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12410.780075United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12420.733375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12430.7667United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12440.7692375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12470.7521875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12480.7459125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12490.704575United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12500.7104375United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12510.736033333United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12520.77195United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12530.7739875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12540.7595375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12550.7818125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12560.791875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12570.7565125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12580.7826125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12590.771625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12600.7754125United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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