Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12630.7327375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12640.76795United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12650.78055United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12660.7646United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12670.7697United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12680.7697United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12690.7660875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12700.758475United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12910.7429875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12920.756575United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12940.7514375United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13000.786575United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13020.6786375United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13110.7796United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13140.7384125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13150.74535United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13160.7404United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13170.7774625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13180.758225United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13190.7726125United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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