Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11680.77905United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11690.791125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11700.7788375United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11710.7799125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11720.7648125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11750.7482United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11760.7589875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11780.7733United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11790.75555United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11800.76745United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11910.7260375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11920.745775United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11940.6934875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11960.7706625United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11970.754125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11980.742075United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12110.775375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12120.7477United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12130.7202United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12140.746325United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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