Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11460.76255United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11470.771075United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11480.674United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11490.758625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11500.7495125United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11510.746975United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11520.767475United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11530.7269875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11540.7386375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11550.7780375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11560.7826375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11570.781025United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11580.723325United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11590.7199125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11600.7383875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11630.7393625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11640.7249United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11650.7793375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11660.7455375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11670.738825United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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