Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11090.77735United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11100.7813125United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11150.75845United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11160.7054United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11170.7610875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11180.77465United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11190.768025United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11200.737475United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11230.7373125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11240.7514375United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11290.747United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11300.7659875United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11330.7677875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11350.7859625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11360.7541United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11370.7712125United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11380.7449875United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11430.7590625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11440.7625125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11450.7870375United StatesUtah40.51274-109.51947
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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