Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10800.780425United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10840.7678875United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10850.725725United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10860.7637United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10890.7118375United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10900.7427375United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10910.7175875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10920.7664875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10930.7557125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10940.7238375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10950.760075United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10960.690875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10970.724775United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10980.7831375United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11010.740875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11030.7597875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11040.745725United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11050.7664United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11060.7759United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11070.7568625United StatesUtah40.1781-111.65071
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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