Details for Phenotype: Seed width widest pos (ID: 81)

Phenotype ID:
81
Name:
Seed width widest pos
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height at which the maximum width occurs to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09580.3589625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09590.365275United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09600.3361375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09610.36095United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09620.39055United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09670.3704625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09680.3664United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09690.376325United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09700.36185United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09720.3630375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09750.3583United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09760.3313375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09770.3846United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09780.3621625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09800.3629375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09810.3849875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09820.3575625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09830.381025United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09840.3478625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09850.362675United StatesNew Mexico36.7268-104.01913
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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