Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09290.4472125United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09310.486975United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09320.4808375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09330.4377125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09340.44805United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09390.4596United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09400.4539375United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09430.44565United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09440.4882875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09470.49025United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09480.451675United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09490.464225United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09500.4793875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09510.4726125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09520.4618875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09530.44455United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09540.4577125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09550.463825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09560.4199875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09570.4494625United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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