Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08930.49495United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08940.4686625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08970.491United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08980.48United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09010.46525United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09020.4805875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09030.481933333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09070.463633333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09080.45652United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09110.4398625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09120.4557625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09130.4599625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09140.4542625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09190.44145United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09200.4462625United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09210.4703875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09220.4718United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09230.4725625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09240.46488United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09270.4428375United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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