Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09580.4408625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09590.45305United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09600.464875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09610.47535United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09620.437625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09670.454325United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09680.4799United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09690.443475United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09700.4529125United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09720.44645United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09750.4633375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09760.4687United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09770.454825United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09780.440775United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09800.457425United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09810.4848625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09820.4931875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09830.4557125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09840.4601United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09850.4624United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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