Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08700.4570375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08710.4511625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08730.4726125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08740.4638375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08760.4345625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08770.4293United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08780.4373United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08790.4429375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08800.458325United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08810.48395United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08820.49955United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08830.479775United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08840.471475United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08850.465475United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08860.4730125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08870.46045United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08880.45805United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08890.4895United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08910.477425United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08920.4626United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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