Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08480.456875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08510.4398125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08520.453375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08530.46645United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08540.4560375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08550.4774625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08560.4818United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08570.441175United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08580.4659United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08590.4612United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08600.472925United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08610.450925United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08620.443371429United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08630.4365United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08640.45695United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08650.4538625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08660.465783333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08670.46745United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08680.443925United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08690.4900875United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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