Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08250.4579625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08260.461575United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08270.4743125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08280.4791375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08310.445275United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08320.438825United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08330.4551375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08340.473675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08350.451675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08360.434925United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08370.4559875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08390.4842375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08400.475025United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08410.4873375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08420.4866625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08430.4871125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08440.4853875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08450.4670625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08460.4956375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08470.4978875United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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