Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13850.5019United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13860.4725125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13870.50445United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13880.497675United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13890.5102875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13900.4964375United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13910.4891625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13920.4698875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13930.482925United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13940.5054125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13950.4708United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13960.4893875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13970.47415United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13980.4776875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13990.4723125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14000.4832375United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14010.48395United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14020.4927875United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14030.4614375United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14040.5010875United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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