Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13650.487625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13660.46575United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13670.476275United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13680.4857375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13690.486475United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13700.4792125United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13710.4986United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13720.4878875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13730.485825United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13740.472075United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13750.4863625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13760.5084625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13770.4746625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13780.4712375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13790.4934125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13800.4782625United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13810.4958375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13820.4934United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13830.4780625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13840.48745United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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