Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13410.494275United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13420.498475United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13430.465075United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13440.481525United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13450.4942United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13460.4727375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13470.469575United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13480.4628United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13500.4782United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13510.4878375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13520.47985United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13530.47285United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13540.455625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13550.4813875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13560.4715125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13590.4869125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13600.4924United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13610.4806375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13630.4735875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13640.4861875United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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