Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12390.483328571United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12400.4961625United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12410.4860875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12420.4842375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12430.498375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12440.4841United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12470.4874625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12480.493825United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12490.505525United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12500.4878125United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12510.463366667United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12520.4708United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12530.4560875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12540.4549625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12550.4877625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12560.4969875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12570.4656375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12580.4542375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12590.4702United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12600.4742375United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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