Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12630.4600125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12640.4524United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12650.4537United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12660.4467United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12670.488625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12680.4785875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12690.4821125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12700.48465United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12910.4459United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12920.4593375United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12940.4668625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13000.473475United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13020.4688United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13110.4645United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13140.4622375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13150.470025United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13160.4767375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13170.475575United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13180.43305United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13190.466325United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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