Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12150.463375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12170.4514United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12180.44315United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12190.4608375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12200.469185714United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12210.4748625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12220.4605875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12230.4683875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12240.4546375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12260.4839United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12270.46535United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12280.4754375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12290.4770375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12300.464725United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12320.484425United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12330.4986United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12350.4773125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12360.4766375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12370.4867375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12380.4776United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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