Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11680.4805375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11690.476275United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11700.4549United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11710.479325United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11720.4786125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11750.4588875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11760.463325United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11780.4667United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11790.4874125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11800.4646125United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11910.4547625United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11920.4589125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11940.46165United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11960.461025United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11970.461925United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11980.467625United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12110.4480625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12120.4844875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12130.459925United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12140.47695United StatesTexas32.92224-97.36547
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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