Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11460.4749125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11470.4655625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11480.4680625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11490.4738625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11500.4543625United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11510.4745875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11520.4502United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11530.4814125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11540.4615875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11550.4647875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11560.480525United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11570.4873625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11580.487475United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11590.4625375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11600.45835United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11630.4900125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11640.480875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11650.473775United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11660.4693625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11670.468275United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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