Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11090.4448875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11100.50535United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11150.4701125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11160.4664United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11170.4565United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11180.4637375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11190.462375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11200.458475United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11230.4409125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11240.4622125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11290.4758United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11300.453275United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11330.45105United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11350.4587625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11360.487875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11370.4748United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11380.46995United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11430.4280375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11440.4606875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11450.439United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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