Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10800.498975United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10840.46475United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10850.4689125United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10860.438United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10890.473025United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10900.466025United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10910.44195United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10920.45535United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10930.4818875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10940.466725United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10950.45515United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10960.465975United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10970.454575United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10980.4754375United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11010.4819375United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11030.47315United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11040.466075United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11050.4700625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11060.4631625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11070.4563375United StatesUtah40.1781-111.65071
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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