Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10370.4715375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10380.4684125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10390.435025United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10400.447825United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10450.4502875United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10460.477675United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10510.49545United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10610.4786United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10620.4624375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10680.48195United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10690.483375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10700.4721United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10710.49365United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10720.4707375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10730.4766125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10750.4920875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10760.512675United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10770.477225United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10780.5023125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10790.4691125United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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