Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10150.45825United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10160.5010125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10170.47472United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10180.476775United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10190.48575United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10200.455525United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10210.4635125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10220.461675United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10230.4619United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10240.474075United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10250.467875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10260.4713125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10290.4848625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10300.4582625United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10310.4510375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10320.4477375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10330.48115United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10340.4614125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10350.4626875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10360.4681625United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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