Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10152.086925United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10162.1030875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10171.70806United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10181.6816United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10192.024025United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10201.8533875United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10211.9850875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10221.8022125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10231.8258United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10242.102775United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10251.9835625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10262.1323625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10291.8807625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10302.0434625United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10312.34815United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10322.22165United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10331.9126875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10341.9316875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10351.76685United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10362.28295United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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