Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.114425United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09871.9341625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09881.8468United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09911.6632United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.242575United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09961.9314625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09971.8699125United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09982.0693875United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09991.712275United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10002.196725United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10011.7767375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10021.9717125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10031.8934125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10071.8822875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10081.9905625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.2287375United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10111.983675United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10122.105475United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10132.279775United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10142.0855125United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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