Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10371.9386125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10381.9879625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10392.0997375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10402.13475United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10452.0092625United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10461.872225United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10511.8214125United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10611.8302375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10622.1185United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10681.6983United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10691.9032875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10701.8214125United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10711.6987625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10721.7993375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10731.8791875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10751.8499125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10762.0435625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10771.851United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10781.8905625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10791.789625United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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