Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08481.9613625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08511.9723375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08521.885275United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08532.2747125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08542.0798United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08552.05005United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08561.952075United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08571.892575United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08581.8652375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08591.799United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08602.0403125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08611.926075United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08622.004071429United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08632.05085United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08642.2325625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08652.0346875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08662.209783333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08672.06925United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08681.85165United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08691.906675United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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