Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08702.0627375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08711.8743375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08731.8064875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08741.9054125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08762.1483375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08771.8886United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08782.1962375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.3413125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08801.79795United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08811.826275United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08822.299675United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08832.01405United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08841.991925United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08851.97635United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08861.8606125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08871.8861125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08881.9537875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.1297United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08911.9172375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.2792125United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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