Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08251.733325United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08261.944175United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08271.7428375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08281.7670125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08312.338625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08321.95905United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08331.9254875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08341.653975United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.319425United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08362.182425United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08371.9173375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08391.8958625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08401.8697United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08412.1194375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08421.6977United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08431.91655United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08441.995925United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08452.0331625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08461.6807875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08471.708125United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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