Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13851.9380375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13861.7999875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13872.1385875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13881.8851375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13891.9482125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13901.871025United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13911.7486875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13921.807725United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13931.8797625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13941.832425United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13951.9879875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13961.92275United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13971.933775United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13981.5839125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13991.7463375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14001.90855United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14011.6808625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14021.7426United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14031.8813875United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14041.637825United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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