Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13652.1702875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13661.9013875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13671.9392375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13682.059625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13692.2844United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13701.8500375United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13711.599775United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13721.6959United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13732.011475United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13742.0211375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13752.2303875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13762.0258United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13772.03405United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13781.6411United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13791.646825United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13801.9184375United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13811.9167125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13821.9035125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13832.003United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13841.7533625United StatesTexas26.50251-97.77181
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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