Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13411.95735United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13421.7060625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13431.4897875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13441.6483625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13451.593475United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13461.8940875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13471.773725United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13482.04805United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13501.8991625United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13511.7472625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13521.6457375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13531.80665United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13541.83515United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13551.9417625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13561.984725United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.2012United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13601.7692625United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13611.7309125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13632.142825United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13642.2778625United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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