Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13201.9677875United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13212.11504United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13222.113575United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13232.0423375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13242.2806875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13251.94345United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13262.0641125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13272.0095United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13281.8588625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13292.1887375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13301.88995United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13311.8786United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13321.931675United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13331.7711875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13341.7512625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13351.86205United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13361.625425United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13381.6783875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13392.00575United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13401.8331United StatesTexas29.11355-97.39837
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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