Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12631.9376375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12642.1063United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12651.7175625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12661.8684625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12671.65005United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12681.718125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12691.9769375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12701.9322625United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12912.019425United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12922.0946United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12941.8537375United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13001.960475United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13022.21575United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13111.8854United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13141.973775United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13152.2029United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13161.7298875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13171.9756375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13181.848525United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13191.774925United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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