Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12392.1238United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12402.012625United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12412.0391625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12422.1559625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12432.1435375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12442.20825United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12472.1412625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12481.9208United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12492.137025United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12502.3353125United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12511.910783333United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12521.70295United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12532.0361125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12541.8960625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12552.0596125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12562.1535United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12571.69965United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12581.763975United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12591.8854375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12601.6316375United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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