Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12151.906125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12171.701575United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12181.7261375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12191.60005United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12201.735485714United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12211.81675United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12221.7723625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12231.753675United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12241.7209United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12261.905275United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12271.9767United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12282.131775United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12291.809025United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12301.6411125United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12321.85595United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12332.1079625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12351.9188United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12362.0404375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12371.869175United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12382.2673United StatesTexas29.05186-99.01808
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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