Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11681.824975United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11692.102525United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11701.962925United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11711.7199375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11721.8311125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11751.88875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11761.9406125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11781.9448United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11791.8594625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11801.9565625United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11911.8173125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11921.8313375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11941.8923875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11962.0465375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11971.8952125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11982.0066United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12111.8941125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12121.819United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12131.7370125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12141.8030625United StatesTexas32.92224-97.36547
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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