Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11461.809775United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11471.8093625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11482.1080125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11492.06855United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11501.9358625United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11511.67785United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11522.0467625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11531.9843625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11542.071825United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11551.875075United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11562.0417625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11572.0120625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11582.013625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11591.76525United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11601.9712United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11632.106775United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11641.912075United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11651.8275875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11662.0167875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11672.1619125United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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