Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11091.986025United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11102.079125United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11151.962175United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11162.0165United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11171.699675United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11181.9062United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11191.8403875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11201.794875United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11231.71105United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11241.7679625United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11291.743425United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11301.7363375United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11331.851675United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11351.787125United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11361.779575United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11371.7625625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11381.8171375United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11431.7619875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11441.920825United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11451.6586625United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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